Variant report

Variant	rs55677099
Chromosome Location	chr7:79939875-79939876
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10954132	0.81[EUR][1000 genomes]
rs11767908	1.00[EUR][1000 genomes]
rs11769508	1.00[EUR][1000 genomes]
rs12533745	1.00[EUR][1000 genomes]
rs34072543	1.00[EUR][1000 genomes]
rs55908064	0.81[EUR][1000 genomes]
rs56186526	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56387529	1.00[EUR][1000 genomes]
rs67117899	1.00[EUR][1000 genomes]
rs67476226	0.93[EUR][1000 genomes]
rs67774045	0.85[EUR][1000 genomes]
rs68161011	0.81[EUR][1000 genomes]
rs6958379	0.93[EUR][1000 genomes]
rs6960023	0.93[EUR][1000 genomes]
rs73153553	0.81[EUR][1000 genomes]
rs73153565	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79936800-79941200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:79936800-79941200	Weak transcription	Osteobl	bone
3	chr7:79937000-79941000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:79937000-79941600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:79937200-79941000	Weak transcription	A549	lung
6	chr7:79937200-79941000	Weak transcription	HMEC	breast
7	chr7:79937200-79941200	Weak transcription	NHLF	lung
8	chr7:79937200-79941400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:79937200-79949000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:79937400-79940000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr7:79937400-79940400	Weak transcription	NHEK	skin
12	chr7:79937400-79941200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:79938400-79941000	Weak transcription	NH-A	brain
14	chr7:79938800-79942000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:79938800-79942200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:79938800-79942400	Enhancers	Primary T cells from cord blood	blood
17	chr7:79939000-79941800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr7:79939200-79940600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:79939400-79940800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:79939400-79943400	Enhancers	HUVEC	blood vessel
21	chr7:79939600-79941000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:79939600-79941000	Weak transcription	Small Intestine	intestine
23	chr7:79939600-79941800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr7:79939800-79941400	Weak transcription	Fetal Intestine Small	intestine

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