Variant report

Variant	rs68161011
Chromosome Location	chr7:79941707-79941708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GNAT3-2	chr7:79941663-79941772	XLOC_006508

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10954132	1.00[EUR][1000 genomes]
rs11767908	0.81[EUR][1000 genomes]
rs11769508	0.81[EUR][1000 genomes]
rs12533745	0.81[EUR][1000 genomes]
rs12535164	0.94[EUR][1000 genomes]
rs34072543	0.81[EUR][1000 genomes]
rs55677099	0.81[EUR][1000 genomes]
rs55908064	1.00[EUR][1000 genomes]
rs56186526	0.81[EUR][1000 genomes]
rs56387529	0.81[EUR][1000 genomes]
rs67117899	0.81[EUR][1000 genomes]
rs73153553	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153565	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79937200-79949000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:79938800-79942000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:79938800-79942200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:79938800-79942400	Enhancers	Primary T cells from cord blood	blood
5	chr7:79939000-79941800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr7:79939400-79943400	Enhancers	HUVEC	blood vessel
7	chr7:79939600-79941800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr7:79940000-79942800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr7:79940400-79942000	Enhancers	Stomach Mucosa	stomach
10	chr7:79940400-79942200	Enhancers	Fetal Lung	lung
11	chr7:79940600-79942000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:79940800-79941800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr7:79940800-79942000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:79940800-79942000	Enhancers	Primary hematopoietic stem cells	blood
15	chr7:79940800-79943400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:79941000-79942000	Enhancers	NH-A	brain
17	chr7:79941000-79942400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr7:79941000-79942800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:79941200-79941800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:79941200-79941800	Flanking Active TSS	HMEC	breast
21	chr7:79941200-79941800	Flanking Active TSS	NHEK	skin
22	chr7:79941200-79942000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:79941200-79942000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr7:79941200-79942000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr7:79941200-79942000	Enhancers	NHLF	lung
26	chr7:79941200-79942200	Enhancers	Colon Smooth Muscle	Colon
27	chr7:79941200-79942200	Enhancers	Osteobl	bone
28	chr7:79941400-79941800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:79941400-79941800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:79941400-79941800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:79941400-79941800	Enhancers	Fetal Intestine Small	intestine
32	chr7:79941400-79942000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:79941400-79942000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr7:79941400-79942000	Enhancers	Fetal Intestine Large	intestine
35	chr7:79941400-79942000	Enhancers	Fetal Stomach	stomach
36	chr7:79941400-79942000	Enhancers	Rectal Smooth Muscle	rectum
37	chr7:79941400-79942000	Flanking Active TSS	A549	lung
38	chr7:79941600-79942000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:79941600-79942000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:79941600-79942000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:79941600-79942000	Enhancers	Fetal Kidney	kidney
42	chr7:79941600-79942000	Enhancers	Fetal Muscle Leg	muscle
43	chr7:79941600-79942000	Enhancers	Fetal Thymus	thymus
44	chr7:79941600-79942000	Enhancers	Gastric	stomach
45	chr7:79941600-79942000	Enhancers	Left Ventricle	heart
46	chr7:79941600-79942000	Enhancers	Stomach Smooth Muscle	stomach
47	chr7:79941600-79942000	Enhancers	HepG2	liver
48	chr7:79941600-79942800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:79941600-79943400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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