Variant report

Variant	rs55908064
Chromosome Location	chr7:79923741-79923742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10954132	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11767908	0.81[EUR][1000 genomes]
rs11769508	0.81[EUR][1000 genomes]
rs12533745	0.81[EUR][1000 genomes]
rs12535164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34072543	0.81[EUR][1000 genomes]
rs55677099	0.81[EUR][1000 genomes]
rs56186526	0.81[EUR][1000 genomes]
rs56387529	0.81[EUR][1000 genomes]
rs67117899	0.81[EUR][1000 genomes]
rs68161011	1.00[EUR][1000 genomes]
rs68172234	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73153553	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153565	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79923200-79923800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79923200-79924200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:79923400-79923800	Enhancers	Osteobl	bone
4	chr7:79923400-79924000	Enhancers	HMEC	breast
5	chr7:79923400-79924200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:79923600-79923800	Enhancers	NHLF	lung
7	chr7:79923600-79924000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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