Variant report

Variant	rs55681447
Chromosome Location	chr5:147081966-147081967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17107233	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1835942	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580493	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6874858	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6874866	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72835155	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72835159	0.89[EUR][1000 genomes]
rs72835162	0.87[EUR][1000 genomes]
rs72835163	0.88[EUR][1000 genomes]
rs7708655	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7716745	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7723843	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7726900	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147078000-147082400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:147078200-147084400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:147078600-147146000	Weak transcription	Primary T cells from cord blood	blood
4	chr5:147079000-147085000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:147079600-147084000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:147079600-147084400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:147079600-147084800	Weak transcription	Brain Angular Gyrus	brain
8	chr5:147079600-147091600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:147079600-147101200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:147081800-147084400	Weak transcription	Brain Hippocampus Middle	brain
11	chr5:147081800-147084400	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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