Variant report

Variant	rs7708655
Chromosome Location	chr5:147073812-147073813
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10463279	0.82[ASN][1000 genomes]
rs17107233	0.92[EUR][1000 genomes]
rs1835942	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55681447	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6580493	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6859405	0.80[AFR][1000 genomes]
rs6874858	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6874866	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72835155	0.91[EUR][1000 genomes]
rs72835159	0.88[EUR][1000 genomes]
rs72835162	0.86[EUR][1000 genomes]
rs72835163	0.87[EUR][1000 genomes]
rs7716745	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7723843	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7726900	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147042000-147076800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:147051400-147076600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:147051600-147075600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:147051600-147077000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:147051600-147078400	Weak transcription	Primary T cells from cord blood	blood
6	chr5:147051800-147076800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:147068400-147074600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:147069400-147074200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:147069800-147074000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:147069800-147074200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:147070000-147074800	Weak transcription	Brain Angular Gyrus	brain
12	chr5:147071400-147074000	Weak transcription	Brain Anterior Caudate	brain
13	chr5:147071600-147077000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:147071600-147077000	Weak transcription	Fetal Stomach	stomach
15	chr5:147071800-147076800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:147072800-147074600	Enhancers	Fetal Heart	heart
17	chr5:147072800-147075800	Enhancers	Fetal Lung	lung
18	chr5:147073200-147077000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr5:147073400-147075200	Enhancers	Brain Germinal Matrix	brain
20	chr5:147073400-147075800	Enhancers	Fetal Brain Male	brain
21	chr5:147073600-147074800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:147073600-147075600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr5:147073800-147074000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:147073800-147074200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:147073800-147075200	Enhancers	Brain Cingulate Gyrus	brain
26	chr5:147073800-147075200	Enhancers	Brain Hippocampus Middle	brain
27	chr5:147073800-147075200	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr5:147073800-147076000	Enhancers	Brain Substantia Nigra	brain
29	chr5:147073800-147076000	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links