Variant report

Variant	rs55689234
Chromosome Location	chr6:139979021-139979022
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55755046	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55961359	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56245861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56335309	1.00[EUR][1000 genomes]
rs59731656	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61478054	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61657098	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61693276	0.80[EUR][1000 genomes]
rs73556057	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743179	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754093	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756228	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9495558	1.00[EUR][1000 genomes]
rs9495560	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9495562	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139974400-139980000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:139977600-139984400	Weak transcription	Pancreas	Pancrea
3	chr6:139978000-139980000	Weak transcription	Fetal Kidney	kidney
4	chr6:139978400-139980000	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links