Variant report
| Variant | rs9495558 |
|---|---|
| Chromosome Location | chr6:139982371-139982372 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:139690842..139699833-chr6:139972012..139982796,35 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-HECA-6 | chr6:139981065-139982650 | NONHSAT115257 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164442 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs55689234 | 1.00[EUR][1000 genomes] |
| rs55755046 | 1.00[EUR][1000 genomes] |
| rs55961359 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56245861 | 1.00[EUR][1000 genomes] |
| rs56335309 | 1.00[EUR][1000 genomes] |
| rs59731656 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61478054 | 1.00[EUR][1000 genomes] |
| rs61657098 | 1.00[EUR][1000 genomes] |
| rs61693276 | 0.80[EUR][1000 genomes] |
| rs73556057 | 1.00[EUR][1000 genomes] |
| rs7743179 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7754093 | 1.00[EUR][1000 genomes] |
| rs7756228 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9495560 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9495562 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869066 | chr6:139777114-140639695 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv516840 | chr6:139960833-140053704 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:139977600-139984400 | Weak transcription | Pancreas | Pancrea |
