Variant report

Variant	rs56335309
Chromosome Location	chr6:139999578-139999579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55689234	1.00[EUR][1000 genomes]
rs55755046	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55961359	1.00[EUR][1000 genomes]
rs56245861	1.00[EUR][1000 genomes]
rs59731656	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61478054	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61657098	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61693276	0.80[EUR][1000 genomes]
rs73556057	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7743179	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754093	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756228	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9495558	1.00[EUR][1000 genomes]
rs9495560	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9495562	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139996600-140000600	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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