Variant report

Variant	rs55700345
Chromosome Location	chr7:66710412-66710413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17146158	0.81[EUR][1000 genomes]
rs4639397	0.88[ASN][1000 genomes]
rs58683630	0.81[ASN][1000 genomes]
rs58750322	0.84[ASN][1000 genomes]
rs59025597	0.85[ASN][1000 genomes]
rs59073608	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59076341	0.87[ASN][1000 genomes]
rs59333040	0.86[ASN][1000 genomes]
rs60864323	0.82[ASN][1000 genomes]
rs61193198	0.85[ASN][1000 genomes]
rs6952761	0.86[ASN][1000 genomes]
rs6977325	0.87[ASN][1000 genomes]
rs73703518	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7798712	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1032237	chr7:66644492-66785029	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv970518	chr7:66647675-66742783	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66667800-66738400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:66670600-66713800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr7:66685000-66717000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr7:66688800-66716600	Weak transcription	Fetal Intestine Large	intestine
5	chr7:66691600-66716400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:66691800-66716200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:66691800-66716400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:66692000-66710600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr7:66694400-66715600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:66694800-66766600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:66695000-66716000	Weak transcription	Liver	Liver
12	chr7:66695400-66710800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:66696000-66716800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:66698200-66717000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:66698800-66716400	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:66701600-66766600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr7:66705000-66724400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:66705400-66714000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:66705400-66716200	Weak transcription	Fetal Stomach	stomach
20	chr7:66707000-66717000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:66709800-66710600	Enhancers	HUES48 Cell Line	embryonic stem cell

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