Variant report

Variant	rs73703518
Chromosome Location	chr7:66688349-66688350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs4639397	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55700345	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58683630	0.88[ASN][1000 genomes]
rs58750322	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59025597	0.93[ASN][1000 genomes]
rs59073608	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59076341	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59333040	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60864323	0.89[ASN][1000 genomes]
rs61193198	0.93[ASN][1000 genomes]
rs6952761	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6977325	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73700361	0.80[ASN][1000 genomes]
rs7798712	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1032237	chr7:66644492-66785029	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv970518	chr7:66647675-66742783	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66654600-66704600	Weak transcription	Gastric	stomach
2	chr7:66654600-66709600	Weak transcription	Lung	lung
3	chr7:66658000-66703200	Weak transcription	Ovary	ovary
4	chr7:66658600-66691000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:66660600-66701600	Weak transcription	Fetal Kidney	kidney
6	chr7:66660600-66703000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:66665600-66706800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:66665800-66703400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:66667800-66738400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:66670600-66713800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:66674000-66691400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:66675800-66693800	Weak transcription	Fetal Lung	lung
13	chr7:66675800-66706600	Weak transcription	Aorta	Aorta
14	chr7:66675800-66706800	Weak transcription	Primary T cells from cord blood	blood
15	chr7:66676000-66690200	Weak transcription	K562	blood
16	chr7:66676000-66691000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:66676000-66702800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:66677200-66688600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:66678400-66688600	Weak transcription	Left Ventricle	heart
20	chr7:66685000-66717000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:66687000-66688800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:66687000-66706800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:66687800-66688400	ZNF genes & repeats	Dnd41	blood
24	chr7:66687800-66696000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:66688000-66688400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
26	chr7:66688000-66688400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:66688000-66688400	Enhancers	HSMM	muscle
28	chr7:66688000-66688600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr7:66688000-66688600	Enhancers	HSMMtube	muscle
30	chr7:66688200-66688800	Enhancers	NHEK	skin
31	chr7:66688200-66688800	Enhancers	NHLF	lung
32	chr7:66688200-66706800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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