Variant report

Variant	rs59076341
Chromosome Location	chr7:66676068-66676069
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4639397	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55700345	0.87[ASN][1000 genomes]
rs58683630	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58750322	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59025597	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59073608	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59333040	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60864323	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61193198	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6952761	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6977325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73703518	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7798712	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
5	esv2422035	chr7:66621964-66676630	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1032237	chr7:66644492-66785029	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv970518	chr7:66647675-66742783	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66628600-66684600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr7:66640600-66677200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:66644400-66683000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:66647000-66677400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:66648200-66679800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:66649200-66677200	Weak transcription	Right Ventricle	heart
7	chr7:66649200-66679200	Weak transcription	NHEK	skin
8	chr7:66654400-66677400	Weak transcription	Esophagus	oesophagus
9	chr7:66654400-66681600	Weak transcription	Spleen	Spleen
10	chr7:66654600-66678200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:66654600-66683400	Weak transcription	Pancreas	Pancrea
12	chr7:66654600-66684600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr7:66654600-66704600	Weak transcription	Gastric	stomach
14	chr7:66654600-66709600	Weak transcription	Lung	lung
15	chr7:66656000-66677000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:66658000-66703200	Weak transcription	Ovary	ovary
17	chr7:66658200-66678600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:66658400-66677400	Weak transcription	Liver	Liver
19	chr7:66658400-66678200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:66658600-66677400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:66658600-66677400	Weak transcription	Brain Substantia Nigra	brain
22	chr7:66658600-66678600	Weak transcription	A549	lung
23	chr7:66658600-66679600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:66658600-66691000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:66658800-66677400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:66659000-66678200	Weak transcription	Left Ventricle	heart
27	chr7:66660400-66677000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr7:66660600-66676400	Weak transcription	Fetal Brain Female	brain
29	chr7:66660600-66677400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:66660600-66701600	Weak transcription	Fetal Kidney	kidney
31	chr7:66660600-66703000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:66662400-66683000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:66662600-66679800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:66665200-66686200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr7:66665200-66686800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:66665600-66706800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr7:66665800-66703400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:66666200-66677400	Weak transcription	HepG2	liver
39	chr7:66667800-66677400	Weak transcription	Fetal Muscle Leg	muscle
40	chr7:66667800-66738400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr7:66670400-66682800	Weak transcription	Fetal Intestine Small	intestine
42	chr7:66670600-66713800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr7:66671200-66676800	Weak transcription	Fetal Heart	heart
44	chr7:66672600-66676200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr7:66672600-66677800	Weak transcription	Primary B cells from cord blood	blood
46	chr7:66672600-66688000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr7:66673600-66678000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:66674000-66691400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr7:66675200-66676200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr7:66675400-66676400	Strong transcription	Rectal Mucosa Donor 29	rectum

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