Variant report

Variant	rs55704901
Chromosome Location	chr2:31219109-31219110
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60765902	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6761803	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73923339	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73923350	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7564074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7570247	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7590934	0.83[AFR][1000 genomes]
rs867497	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31156000-31221400	Weak transcription	Pancreas	Pancrea
2	chr2:31203600-31221400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:31203600-31227200	Weak transcription	HMEC	breast
4	chr2:31211200-31233800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:31211400-31221600	Weak transcription	NHEK	skin
6	chr2:31211600-31221600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:31216000-31221000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:31217800-31226800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:31218000-31226400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr2:31218200-31220000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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