Variant report

Variant	rs7570247
Chromosome Location	chr2:31232511-31232512
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55704901	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60765902	1.00[AMR][1000 genomes]
rs6753235	1.00[EUR][1000 genomes]
rs6761803	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73923339	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73923350	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7564074	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7590934	0.90[AFR][1000 genomes]
rs867497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31211200-31233800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:31228400-31233400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:31230000-31232800	Enhancers	Fetal Kidney	kidney
4	chr2:31230400-31232600	Enhancers	Fetal Lung	lung
5	chr2:31231800-31233800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:31232200-31232600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:31232400-31232600	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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