Variant report

Variant	rs73923339
Chromosome Location	chr2:31211661-31211662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55704901	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60765902	1.00[AMR][1000 genomes]
rs6761803	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73923350	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7564074	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7570247	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs867497	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31147600-31213000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:31156000-31221400	Weak transcription	Pancreas	Pancrea
3	chr2:31200600-31213400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:31203600-31221400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:31203600-31227200	Weak transcription	HMEC	breast
6	chr2:31204600-31213600	Weak transcription	Brain Germinal Matrix	brain
7	chr2:31204800-31213000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:31205000-31212800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:31205000-31212800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:31205000-31213200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:31206800-31211800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:31207400-31212800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:31207800-31218400	Weak transcription	Esophagus	oesophagus
14	chr2:31209800-31211800	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:31210200-31212400	Enhancers	Fetal Kidney	kidney
16	chr2:31210200-31213400	Weak transcription	Fetal Lung	lung
17	chr2:31210400-31213400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:31211200-31213400	Weak transcription	Fetal Stomach	stomach
19	chr2:31211200-31215000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:31211200-31233800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:31211400-31221600	Weak transcription	NHEK	skin
22	chr2:31211600-31211800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:31211600-31215200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:31211600-31221600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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