Variant report

Variant	rs55706620
Chromosome Location	chr7:85140322-85140323
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12112405	1.00[AFR][1000 genomes]
rs56006826	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56210213	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56921257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57097555	1.00[AFR][1000 genomes]
rs57680001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58985818	1.00[AFR][1000 genomes]
rs59146000	1.00[AFR][1000 genomes]
rs59457049	1.00[AFR][1000 genomes]
rs59713357	0.97[AFR][1000 genomes]
rs59845888	0.96[AFR][1000 genomes]
rs60004442	0.98[AFR][1000 genomes]
rs60395715	1.00[AFR][1000 genomes]
rs60781441	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61197824	1.00[AFR][1000 genomes]
rs61571379	1.00[AFR][1000 genomes]
rs6951975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703654	1.00[AFR][1000 genomes]
rs73703658	0.98[AFR][1000 genomes]
rs73703659	1.00[AFR][1000 genomes]
rs73703668	1.00[AFR][1000 genomes]
rs73703672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703674	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703677	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703679	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703680	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703683	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703684	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703685	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9942712	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3327487	chr7:84901505-85320690	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv888649	chr7:85099898-85356773	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2761345	chr7:85104681-85187726	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1034789	chr7:85137730-85175007	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv888650	chr7:85138665-85267174	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:85139000-85146200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:85139200-85144000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:85139200-85144000	Weak transcription	NHLF	lung
4	chr7:85139200-85144400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:85139800-85145800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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