Variant report

Variant	rs61571379
Chromosome Location	chr7:85126352-85126353
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11981303	1.00[AMR][1000 genomes]
rs11981334	1.00[AMR][1000 genomes]
rs11982469	1.00[AMR][1000 genomes]
rs12112405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55706620	1.00[AFR][1000 genomes]
rs56006826	0.92[AFR][1000 genomes]
rs56210213	0.96[AFR][1000 genomes]
rs56921257	0.96[AFR][1000 genomes]
rs57097555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57680001	0.96[AFR][1000 genomes]
rs58985818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59146000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59457049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59713357	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59845888	0.96[AFR][1000 genomes]
rs60004442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60395715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60781441	0.96[AFR][1000 genomes]
rs61197824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951975	1.00[AFR][1000 genomes]
rs73703654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703658	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703672	0.96[AFR][1000 genomes]
rs73703674	0.96[AFR][1000 genomes]
rs73703676	0.96[AFR][1000 genomes]
rs73703677	0.96[AFR][1000 genomes]
rs73703679	0.96[AFR][1000 genomes]
rs73703680	0.96[AFR][1000 genomes]
rs73703681	0.96[AFR][1000 genomes]
rs73703683	0.93[AFR][1000 genomes]
rs73703684	0.96[AFR][1000 genomes]
rs73703685	0.96[AFR][1000 genomes]
rs9942712	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3327487	chr7:84901505-85320690	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv888649	chr7:85099898-85356773	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2761345	chr7:85104681-85187726	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:85126200-85127200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:85126200-85127200	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links