Variant report

Variant	rs57680001
Chromosome Location	chr7:85159897-85159898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12112405	0.96[AFR][1000 genomes]
rs55706620	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56006826	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56210213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56921257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57097555	0.96[AFR][1000 genomes]
rs58985818	0.96[AFR][1000 genomes]
rs59146000	0.96[AFR][1000 genomes]
rs59457049	0.96[AFR][1000 genomes]
rs59713357	0.93[AFR][1000 genomes]
rs59845888	1.00[AFR][1000 genomes]
rs60004442	0.95[AFR][1000 genomes]
rs60395715	0.96[AFR][1000 genomes]
rs60781441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61197824	0.96[AFR][1000 genomes]
rs61571379	0.96[AFR][1000 genomes]
rs6951975	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703654	0.96[AFR][1000 genomes]
rs73703658	0.95[AFR][1000 genomes]
rs73703659	0.96[AFR][1000 genomes]
rs73703668	0.96[AFR][1000 genomes]
rs73703672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703683	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73703685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9942712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3327487	chr7:84901505-85320690	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv888649	chr7:85099898-85356773	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2761345	chr7:85104681-85187726	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1034789	chr7:85137730-85175007	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv888650	chr7:85138665-85267174	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1021810	chr7:85148963-85194663	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2758123	chr7:85153322-85318042	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2759542	chr7:85153322-85318042	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv831051	chr7:85154948-85321916	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:85158000-85160000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:85159000-85160800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:85159200-85160000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:85159800-85160200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links