Variant report

Variant	rs55710464
Chromosome Location	chr6:110376036-110376037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs58198671	1.00[AMR][1000 genomes]
rs58698036	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61079231	1.00[AMR][1000 genomes]
rs6899838	1.00[AMR][1000 genomes]
rs6903407	1.00[AMR][1000 genomes]
rs6903849	1.00[AMR][1000 genomes]
rs6911667	1.00[AMR][1000 genomes]
rs6914473	1.00[AMR][1000 genomes]
rs6927833	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765616	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765620	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765623	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765624	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765625	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765626	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765627	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765629	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765630	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765631	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765634	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689445	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110375000-110376600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:110375000-110380800	Weak transcription	Ovary	ovary
3	chr6:110375200-110376400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:110375200-110376400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:110375800-110376800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr6:110376000-110376600	Enhancers	Fetal Muscle Trunk	muscle
7	chr6:110376000-110377000	Bivalent Enhancer	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links