Variant report

Variant	rs73765623
Chromosome Location	chr6:110376651-110376652
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55710464	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58198671	1.00[AMR][1000 genomes]
rs58698036	1.00[AMR][1000 genomes]
rs61079231	1.00[AMR][1000 genomes]
rs6899838	1.00[AMR][1000 genomes]
rs6903407	1.00[AMR][1000 genomes]
rs6903849	1.00[AMR][1000 genomes]
rs6911667	1.00[AMR][1000 genomes]
rs6914473	1.00[AMR][1000 genomes]
rs6927833	1.00[AMR][1000 genomes]
rs73765616	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765617	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765620	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765622	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765624	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765625	1.00[AMR][1000 genomes]
rs73765626	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765627	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765629	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765630	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765631	1.00[AMR][1000 genomes]
rs73765634	1.00[AMR][1000 genomes]
rs9689445	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110375000-110380800	Weak transcription	Ovary	ovary
2	chr6:110375800-110376800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
3	chr6:110376000-110377000	Bivalent Enhancer	HepG2	liver
4	chr6:110376200-110376800	Enhancers	Spleen	Spleen
5	chr6:110376400-110376800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:110376400-110377000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:110376400-110377400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:110376400-110384600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:110376600-110376800	Bivalent Enhancer	HUVEC	blood vessel
10	chr6:110376600-110377000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:110376600-110377200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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