Variant report

Variant	rs73765629
Chromosome Location	chr6:110378056-110378057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55710464	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58198671	1.00[AMR][1000 genomes]
rs58698036	1.00[AMR][1000 genomes]
rs61079231	1.00[AMR][1000 genomes]
rs6899838	1.00[AMR][1000 genomes]
rs6903407	1.00[AMR][1000 genomes]
rs6903849	1.00[AMR][1000 genomes]
rs6911667	1.00[AMR][1000 genomes]
rs6914473	1.00[AMR][1000 genomes]
rs6927833	1.00[AMR][1000 genomes]
rs73765616	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765617	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765620	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765622	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765623	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765625	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765627	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765630	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765631	1.00[AMR][1000 genomes]
rs73765634	1.00[AMR][1000 genomes]
rs9689445	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110375000-110380800	Weak transcription	Ovary	ovary
2	chr6:110376400-110384600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links