Variant report

Variant	rs55712495
Chromosome Location	chr5:106954035-106954036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56387153	1.00[AMR][1000 genomes]
rs57235588	1.00[AMR][1000 genomes]
rs59056455	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59767200	1.00[AMR][1000 genomes]
rs61466405	1.00[AMR][1000 genomes]
rs61516790	1.00[AMR][1000 genomes]
rs61628334	1.00[AMR][1000 genomes]
rs73777707	1.00[AMR][1000 genomes]
rs73777721	1.00[AMR][1000 genomes]
rs73780413	1.00[AMR][1000 genomes]
rs73781124	1.00[AMR][1000 genomes]
rs73781143	1.00[AMR][1000 genomes]
rs73781144	1.00[AMR][1000 genomes]
rs73781146	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781148	1.00[AMR][1000 genomes]
rs73781149	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781153	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781154	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:106947200-106957400	Weak transcription	GM12878-XiMat	blood
4	chr5:106950600-106954400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:106950800-106954200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:106950800-106954400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:106951000-106956200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:106951400-106954600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr5:106951400-106955600	Weak transcription	Fetal Lung	lung
10	chr5:106951600-106954400	Enhancers	A549	lung
11	chr5:106952000-106954800	Enhancers	Fetal Heart	heart
12	chr5:106952600-106954200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:106952600-106954400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:106953000-106954200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:106953000-106954400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr5:106953000-106955600	Weak transcription	Fetal Brain Male	brain
17	chr5:106953200-106954200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:106953200-106956800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:106953200-106959600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:106953400-106957000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr5:106953600-106954600	Enhancers	Hela-S3	cervix
22	chr5:106953600-106962200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:106953800-106954200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr5:106953800-106954200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr5:106953800-106954600	Enhancers	NHDF-Ad	bronchial
26	chr5:106954000-106954200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:106954000-106954400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:106954000-106954400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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