Variant report

Variant	rs73780413
Chromosome Location	chr5:107112850-107112851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55712495	1.00[AMR][1000 genomes]
rs56387153	1.00[AMR][1000 genomes]
rs59056455	1.00[AMR][1000 genomes]
rs59767200	1.00[AMR][1000 genomes]
rs61466405	1.00[AMR][1000 genomes]
rs61516790	1.00[AMR][1000 genomes]
rs73777707	1.00[AMR][1000 genomes]
rs73777721	1.00[AMR][1000 genomes]
rs73781124	1.00[AMR][1000 genomes]
rs73781143	1.00[AMR][1000 genomes]
rs73781144	1.00[AMR][1000 genomes]
rs73781146	1.00[AMR][1000 genomes]
rs73781148	1.00[AMR][1000 genomes]
rs73781149	1.00[AMR][1000 genomes]
rs73781153	1.00[AMR][1000 genomes]
rs73781154	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107109800-107116800	Weak transcription	Fetal Intestine Large	intestine
2	chr5:107111800-107113200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:107112000-107115000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:107112200-107113000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:107112200-107113000	Enhancers	Duodenum Mucosa	Duodenum
6	chr5:107112200-107113200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:107112200-107113200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:107112200-107113400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:107112400-107113000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:107112400-107113000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:107112400-107113200	Enhancers	Fetal Lung	lung
12	chr5:107112400-107113400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:107112400-107113400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:107112600-107113200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:107112600-107113400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:107112800-107113200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr5:107112800-107113200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:107112800-107113400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:107112800-107116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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