Variant report

Variant	rs56387153
Chromosome Location	chr5:106990416-106990417
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55712495	1.00[AMR][1000 genomes]
rs57235588	1.00[AMR][1000 genomes]
rs59056455	1.00[AMR][1000 genomes]
rs59767200	1.00[AMR][1000 genomes]
rs61466405	1.00[AMR][1000 genomes]
rs61516790	1.00[AMR][1000 genomes]
rs61628334	1.00[AMR][1000 genomes]
rs73777707	1.00[AMR][1000 genomes]
rs73777721	1.00[AMR][1000 genomes]
rs73780413	1.00[AMR][1000 genomes]
rs73781124	1.00[AMR][1000 genomes]
rs73781143	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781144	1.00[AMR][1000 genomes]
rs73781146	1.00[AMR][1000 genomes]
rs73781148	1.00[AMR][1000 genomes]
rs73781149	1.00[AMR][1000 genomes]
rs73781153	1.00[AMR][1000 genomes]
rs73781154	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1797335	chr5:106981612-107004761	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106976600-106991600	Weak transcription	Left Ventricle	heart
2	chr5:106983600-106990800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:106984400-106991600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:106985800-106992000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:106986000-106992200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:106986400-106993600	Enhancers	A549	lung
7	chr5:106986800-106991400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:106987600-107001000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr5:106988000-106992200	Enhancers	Fetal Heart	heart
10	chr5:106988200-106992200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:106989000-106992200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:106989200-106991600	Weak transcription	Aorta	Aorta
13	chr5:106989200-106992200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:106989200-106997000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:106989200-107003000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:106989400-107004000	Weak transcription	Fetal Stomach	stomach
17	chr5:106989600-106991200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:106989600-106997800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr5:106989600-107002000	Weak transcription	Fetal Lung	lung
20	chr5:106989800-106991400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr5:106989800-106997000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:106990000-106991400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr5:106990000-106991400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:106990000-106991600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:106990200-106991400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr5:106990200-106991800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr5:106990400-106997000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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