Variant report
| Variant | rs55728917 |
|---|---|
| Chromosome Location | chr1:167003843-167003844 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs16858259 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs41269700 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs55778013 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs55874020 | 0.94[EUR][1000 genomes] |
| rs56114212 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56190430 | 0.88[AMR][1000 genomes] |
| rs56252399 | 0.84[EUR][1000 genomes] |
| rs56259579 | 0.94[EUR][1000 genomes] |
| rs57274627 | 0.84[EUR][1000 genomes] |
| rs59862115 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6699306 | 0.94[EUR][1000 genomes] |
| rs73026741 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs73026777 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73026798 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73026802 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73028838 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73028882 | 0.94[EUR][1000 genomes] |
| rs73028886 | 0.94[EUR][1000 genomes] |
| rs73028893 | 0.89[EUR][1000 genomes] |
| rs73028896 | 0.94[EUR][1000 genomes] |
| rs74119526 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004148 | chr1:166951869-167016311 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2750815 | chr1:166953866-167180342 | Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv528049 | chr1:167003539-167010083 | Flanking Active TSS Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 4 | nsv519114 | chr1:167003539-167015184 | Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:167003800-167004200 | Enhancers | Fetal Heart | heart |
