Variant report

Variant	rs41269700
Chromosome Location	chr1:166958826-166958827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16858144	0.89[EUR][1000 genomes]
rs16858259	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55728917	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55737217	0.89[EUR][1000 genomes]
rs55778013	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56114212	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56190430	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56252399	1.00[EUR][1000 genomes]
rs56383249	0.85[EUR][1000 genomes]
rs57274627	1.00[EUR][1000 genomes]
rs59862115	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73026741	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73026777	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73026798	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73026802	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73028838	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74119526	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004148	chr1:166951869-167016311	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2750815	chr1:166953866-167180342	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166958400-166959000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:166958400-166964600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:166958600-166959200	Active TSS	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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