Variant report

Variant	rs55737217
Chromosome Location	chr1:166832631-166832632
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:166832382..166838058-chr1:166843027..166847962,8	MCF-7	breast:
2	chr1:166824337..166827192-chr1:166832491..166834290,2	MCF-7	breast:
3	chr1:166832615..166835438-chr1:166843952..166846940,5	K562	blood:

Variant related genes	Relation type
ENSG00000152382	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16858144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16858259	0.84[EUR][1000 genomes]
rs34055645	0.89[AFR][1000 genomes]
rs41269700	0.89[EUR][1000 genomes]
rs55675362	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55778013	0.89[EUR][1000 genomes]
rs55866154	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56052427	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56190430	0.81[EUR][1000 genomes]
rs56252399	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56290988	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56383249	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57274627	0.89[EUR][1000 genomes]
rs59862115	0.81[EUR][1000 genomes]
rs73026741	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166809600-166844400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:166810600-166834800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:166810600-166838800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:166810800-166834200	Strong transcription	Fetal Stomach	stomach
5	chr1:166810800-166835200	Strong transcription	K562	blood
6	chr1:166810800-166839200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:166810800-166839200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:166811000-166835600	Strong transcription	Primary B cells from cord blood	blood
9	chr1:166811200-166834600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:166811200-166839800	Strong transcription	Primary T cells from cord blood	blood
11	chr1:166811800-166838600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:166811800-166838600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:166812000-166838400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr1:166812000-166838800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr1:166812200-166838800	Strong transcription	Fetal Thymus	thymus
16	chr1:166813000-166834200	Strong transcription	Hela-S3	cervix
17	chr1:166813200-166834600	Strong transcription	Placenta	Placenta
18	chr1:166813200-166840600	Strong transcription	Dnd41	blood
19	chr1:166813400-166838400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:166813600-166838600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr1:166813600-166839200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr1:166813800-166838400	Strong transcription	Fetal Intestine Large	intestine
23	chr1:166814200-166834000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:166814200-166834600	Strong transcription	Adipose Nuclei	Adipose
25	chr1:166814200-166838800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:166814400-166833800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:166814400-166834200	Strong transcription	Stomach Smooth Muscle	stomach
28	chr1:166814400-166834400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr1:166814400-166835800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr1:166814600-166834200	Strong transcription	Osteobl	bone
31	chr1:166814800-166834600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:166814800-166838200	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr1:166815000-166833800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:166815200-166838400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr1:166815400-166838200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:166819400-166841400	Weak transcription	Stomach Mucosa	stomach
37	chr1:166819600-166838400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr1:166819800-166842600	Weak transcription	Small Intestine	intestine
39	chr1:166821200-166835800	Strong transcription	Fetal Brain Female	brain
40	chr1:166823000-166834000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr1:166823200-166834200	Strong transcription	Thymus	Thymus
42	chr1:166824400-166837200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr1:166824600-166838200	Strong transcription	Fetal Intestine Small	intestine
44	chr1:166825000-166834200	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr1:166825000-166844400	Weak transcription	HSMMtube	muscle
46	chr1:166825600-166839200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr1:166825800-166838000	Strong transcription	HepG2	liver
48	chr1:166825800-166838800	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr1:166826800-166832800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr1:166826800-166837400	Weak transcription	HSMM	muscle

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