Variant report

Variant	rs34055645
Chromosome Location	chr1:166835743-166835744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:166833957..166837285-chr1:166843976..166847028,5	MCF-7	breast:
2	chr1:166832382..166838058-chr1:166843027..166847962,8	MCF-7	breast:
3	chr1:166808610..166810800-chr1:166834167..166836603,3	MCF-7	breast:
4	chr1:166834537..166836266-chr1:166840121..166843058,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152382	Chromatin interaction
ENSG00000143157	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10489574	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12757660	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16858144	0.89[AFR][1000 genomes]
rs16858233	0.85[EUR][1000 genomes]
rs17331190	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs33958744	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34370696	0.83[EUR][1000 genomes]
rs36110323	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36119409	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55737217	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166809600-166844400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:166810600-166838800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:166810800-166839200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:166810800-166839200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:166811200-166839800	Strong transcription	Primary T cells from cord blood	blood
6	chr1:166811800-166838600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:166811800-166838600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:166812000-166838400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr1:166812000-166838800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr1:166812200-166838800	Strong transcription	Fetal Thymus	thymus
11	chr1:166813200-166840600	Strong transcription	Dnd41	blood
12	chr1:166813400-166838400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:166813600-166838600	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr1:166813600-166839200	Strong transcription	Duodenum Mucosa	Duodenum
15	chr1:166813800-166838400	Strong transcription	Fetal Intestine Large	intestine
16	chr1:166814200-166838800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:166814400-166835800	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr1:166814800-166838200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr1:166815200-166838400	Strong transcription	Fetal Muscle Trunk	muscle
20	chr1:166815400-166838200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:166819400-166841400	Weak transcription	Stomach Mucosa	stomach
22	chr1:166819600-166838400	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr1:166819800-166842600	Weak transcription	Small Intestine	intestine
24	chr1:166821200-166835800	Strong transcription	Fetal Brain Female	brain
25	chr1:166824400-166837200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr1:166824600-166838200	Strong transcription	Fetal Intestine Small	intestine
27	chr1:166825000-166844400	Weak transcription	HSMMtube	muscle
28	chr1:166825600-166839200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr1:166825800-166838000	Strong transcription	HepG2	liver
30	chr1:166825800-166838800	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr1:166826800-166837400	Weak transcription	HSMM	muscle
32	chr1:166827000-166837600	Weak transcription	NHLF	lung
33	chr1:166827000-166840800	Weak transcription	Psoas Muscle	Psoas
34	chr1:166828200-166837400	Weak transcription	Colonic Mucosa	Colon
35	chr1:166828600-166838400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr1:166829200-166836600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:166829200-166837400	Weak transcription	Brain Germinal Matrix	brain
38	chr1:166829200-166837600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr1:166829200-166837800	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr1:166829200-166838400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:166829200-166843400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr1:166829200-166844200	Weak transcription	Fetal Heart	heart
43	chr1:166829200-166844400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr1:166829400-166837600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr1:166829400-166840600	Weak transcription	Colon Smooth Muscle	Colon
46	chr1:166829800-166837400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr1:166829800-166837400	Weak transcription	NHDF-Ad	bronchial
48	chr1:166829800-166837400	Weak transcription	NHEK	skin
49	chr1:166829800-166837600	Strong transcription	Liver	Liver
50	chr1:166830800-166837400	Weak transcription	Fetal Brain Male	brain

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