Variant report

Variant	rs12757660
Chromosome Location	chr1:166883273-166883274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10489574	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16858233	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17331190	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs33958744	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34055645	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36110323	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36119409	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166876400-166889400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:166876800-166889400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:166879200-166889600	Weak transcription	Brain Anterior Caudate	brain
4	chr1:166879400-166889600	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:166880000-166886600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:166880200-166885200	Weak transcription	HMEC	breast
7	chr1:166880800-166909600	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:166881400-166884400	Weak transcription	NH-A	brain
9	chr1:166882200-166885200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:166882200-166885400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:166882200-166888400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:166882200-166899600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:166882400-166884600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:166882400-166884600	Weak transcription	Dnd41	blood
15	chr1:166882400-166886800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:166883000-166884600	Enhancers	Placenta	Placenta
17	chr1:166883200-166883400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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