Variant report

Variant	rs17331190
Chromosome Location	chr1:166857963-166857964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10489574	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12742385	0.81[CEU][hapmap]
rs12757660	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16858233	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs33958744	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34055645	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34370696	0.84[EUR][1000 genomes]
rs34925982	0.93[CEU][hapmap]
rs36110323	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36119409	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166854200-166858400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:166855000-166858000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:166855400-166860400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:166855600-166859600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:166856600-166862000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:166857200-166859000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:166857400-166859000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:166857600-166858600	Enhancers	Fetal Brain Male	brain
9	chr1:166857800-166858000	Enhancers	Colon Smooth Muscle	Colon
10	chr1:166857800-166858200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:166857800-166858400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:166857800-166858400	Enhancers	Brain Cingulate Gyrus	brain
13	chr1:166857800-166858400	Enhancers	Brain Germinal Matrix	brain
14	chr1:166857800-166858400	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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