Variant report

Variant	rs36110323
Chromosome Location	chr1:166894953-166894954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10489574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12757660	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16858233	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17331190	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs33958744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34055645	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36119409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56252399	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166880800-166909600	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:166882200-166899600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:166890400-166895200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:166890400-166906600	Weak transcription	Brain Anterior Caudate	brain
5	chr1:166890800-166904400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:166890800-166907400	Weak transcription	Brain Angular Gyrus	brain
7	chr1:166890800-166907600	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:166891000-166899200	Weak transcription	Brain Germinal Matrix	brain
9	chr1:166891000-166916400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:166892000-166913800	Weak transcription	Thymus	Thymus
11	chr1:166892200-166895200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:166892200-166895800	Enhancers	Primary B cells from peripheral blood	blood
13	chr1:166892800-166904600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:166893600-166896400	Strong transcription	Dnd41	blood
15	chr1:166893800-166895200	Enhancers	GM12878-XiMat	blood
16	chr1:166894000-166895600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:166894400-166895400	Enhancers	HSMM	muscle
18	chr1:166894400-166895600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:166894400-166896200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:166894400-166897600	Enhancers	Fetal Heart	heart
21	chr1:166894600-166895000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:166894600-166895000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr1:166894600-166895000	Flanking Active TSS	HSMMtube	muscle
24	chr1:166894600-166895400	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr1:166894600-166895600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr1:166894600-166895800	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr1:166894600-166895800	Enhancers	Placenta	Placenta
28	chr1:166894600-166895800	Flanking Active TSS	NH-A	brain
29	chr1:166894600-166896400	Enhancers	Left Ventricle	heart
30	chr1:166894800-166895000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr1:166894800-166895000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:166894800-166895000	Flanking Active TSS	NHLF	lung
33	chr1:166894800-166895200	Bivalent Enhancer	Primary B cells from cord blood	blood
34	chr1:166894800-166895200	Enhancers	Fetal Brain Male	brain
35	chr1:166894800-166895400	Enhancers	H1 Cell Line	embryonic stem cell
36	chr1:166894800-166895400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr1:166894800-166895400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:166894800-166895400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:166894800-166895600	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr1:166894800-166895600	Enhancers	H9 Cell Line	embryonic stem cell
41	chr1:166894800-166895600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr1:166894800-166895600	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr1:166894800-166895600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr1:166894800-166895600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr1:166894800-166895600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:166894800-166895600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:166894800-166895800	Enhancers	Osteobl	bone
48	chr1:166894800-166896400	Enhancers	Right Atrium	heart

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