Variant report

Variant	rs33958744
Chromosome Location	chr1:166905927-166905928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166898189..166900017-chr1:166904554..166906542,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10489574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12757660	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16858233	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17331190	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34055645	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36110323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36119409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56252399	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166880800-166909600	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:166890400-166906600	Weak transcription	Brain Anterior Caudate	brain
3	chr1:166890800-166907400	Weak transcription	Brain Angular Gyrus	brain
4	chr1:166890800-166907600	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:166891000-166916400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:166892000-166913800	Weak transcription	Thymus	Thymus
7	chr1:166895800-166906600	Weak transcription	Right Ventricle	heart
8	chr1:166896400-166910400	Weak transcription	Left Ventricle	heart
9	chr1:166897600-166906000	Weak transcription	Fetal Heart	heart
10	chr1:166899600-166913000	Weak transcription	Brain Germinal Matrix	brain
11	chr1:166900400-166908600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:166900800-166913600	Weak transcription	GM12878-XiMat	blood
13	chr1:166901600-166906000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:166903600-166906800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:166904200-166906000	Strong transcription	Dnd41	blood
16	chr1:166904200-166913000	Weak transcription	HSMMtube	muscle
17	chr1:166904400-166913400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:166904600-166907600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:166904800-166907000	Weak transcription	Brain Substantia Nigra	brain
20	chr1:166904800-166909800	Weak transcription	Pancreas	Pancrea
21	chr1:166905000-166907000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:166905000-166907000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr1:166905600-166906000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:166905800-166913600	Weak transcription	Right Atrium	heart
25	chr1:166905800-166915200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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