Variant report

Variant	rs73026741
Chromosome Location	chr1:166940175-166940176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16858144	0.89[EUR][1000 genomes]
rs16858233	0.93[AFR][1000 genomes]
rs16858259	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41269700	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55728917	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55737217	0.89[EUR][1000 genomes]
rs55778013	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56114212	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56190430	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56252399	1.00[EUR][1000 genomes]
rs56383249	0.85[EUR][1000 genomes]
rs57274627	1.00[EUR][1000 genomes]
rs59862115	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73026777	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73026798	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73026802	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73028838	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74119526	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166927400-166941600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr1:166927600-166940200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:166936600-166941600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:166936800-166940200	Weak transcription	Fetal Heart	heart
5	chr1:166937600-166942200	Weak transcription	Brain Angular Gyrus	brain
6	chr1:166937800-166941000	Enhancers	Primary T cells from cord blood	blood
7	chr1:166938000-166940200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:166939000-166940200	Weak transcription	Thymus	Thymus
9	chr1:166939200-166940200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr1:166939200-166943000	Enhancers	Dnd41	blood
11	chr1:166939800-166940600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:166939800-166940800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:166939800-166942000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:166940000-166940400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr1:166940000-166940600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:166940000-166940600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr1:166940000-166940600	Flanking Active TSS	GM12878-XiMat	blood
18	chr1:166940000-166941000	Enhancers	Fetal Thymus	thymus
19	chr1:166940000-166941600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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