Variant report

Variant	rs55735426
Chromosome Location	chr15:40312615-40312616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12164905	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899936	1.00[ASN][1000 genomes]
rs12912499	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28714278	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34513107	1.00[ASN][1000 genomes]
rs34519780	1.00[ASN][1000 genomes]
rs34754163	1.00[ASN][1000 genomes]
rs35602605	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35707718	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40228200-40323800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:40293000-40315000	Strong transcription	Stomach Smooth Muscle	stomach
3	chr15:40296200-40313000	Weak transcription	Psoas Muscle	Psoas
4	chr15:40296400-40313200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:40296400-40325200	Weak transcription	Hela-S3	cervix
6	chr15:40301000-40322000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:40301200-40313000	Weak transcription	K562	blood
8	chr15:40301200-40313200	Weak transcription	Fetal Heart	heart
9	chr15:40303000-40329600	Strong transcription	Liver	Liver
10	chr15:40303800-40320600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:40304600-40313000	Weak transcription	Small Intestine	intestine
12	chr15:40305200-40330200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:40306800-40313000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:40306800-40313000	Weak transcription	Fetal Brain Male	brain
15	chr15:40306800-40313800	Strong transcription	Adipose Nuclei	Adipose
16	chr15:40306800-40313800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr15:40306800-40315200	Strong transcription	NHEK	skin
18	chr15:40306800-40319200	Strong transcription	Fetal Intestine Large	intestine
19	chr15:40306800-40319600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:40306800-40328800	Weak transcription	Stomach Mucosa	stomach
21	chr15:40306800-40329800	Strong transcription	Osteobl	bone
22	chr15:40307000-40313000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:40307000-40315000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:40307000-40315400	Strong transcription	Fetal Stomach	stomach
25	chr15:40307000-40318600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:40307000-40329000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:40307000-40329400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:40307200-40313000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:40307200-40315400	Strong transcription	Fetal Muscle Leg	muscle
30	chr15:40307200-40329600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:40307400-40313600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:40307400-40326800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:40307400-40329600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:40307600-40314800	Strong transcription	Primary hematopoietic stem cells	blood
35	chr15:40307600-40314800	Strong transcription	Placenta	Placenta
36	chr15:40307600-40317400	Strong transcription	HUVEC	blood vessel
37	chr15:40307600-40319000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:40307600-40326200	Strong transcription	HSMM	muscle
39	chr15:40307600-40329200	Strong transcription	H9 Cell Line	embryonic stem cell
40	chr15:40307600-40329200	Strong transcription	HMEC	breast
41	chr15:40307800-40313000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:40307800-40313800	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr15:40307800-40315400	Strong transcription	Fetal Intestine Small	intestine
44	chr15:40307800-40329600	Strong transcription	NH-A	brain
45	chr15:40307800-40330000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr15:40308000-40313000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:40308000-40314000	Strong transcription	Primary B cells from cord blood	blood
48	chr15:40308000-40329000	Strong transcription	HepG2	liver
49	chr15:40308000-40329600	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr15:40308000-40329800	Strong transcription	NHDF-Ad	bronchial

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