Variant report

Variant	rs55736023
Chromosome Location	chr5:42970185-42970186
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:42969037..42971723-chr5:42975649..42977780,2	K562	blood:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10472376	1.00[ASN][1000 genomes]
rs10941609	1.00[ASN][1000 genomes]
rs11744076	1.00[ASN][1000 genomes]
rs11746055	1.00[ASN][1000 genomes]
rs12516224	1.00[ASN][1000 genomes]
rs12521684	1.00[ASN][1000 genomes]
rs13361827	1.00[ASN][1000 genomes]
rs160331	1.00[ASN][1000 genomes]
rs160332	1.00[ASN][1000 genomes]
rs16872962	1.00[ASN][1000 genomes]
rs16874465	1.00[ASN][1000 genomes]
rs17300495	1.00[ASN][1000 genomes]
rs2444853	1.00[ASN][1000 genomes]
rs2548363	1.00[ASN][1000 genomes]
rs2548367	1.00[ASN][1000 genomes]
rs2548368	1.00[ASN][1000 genomes]
rs2603635	1.00[ASN][1000 genomes]
rs2924818	1.00[ASN][1000 genomes]
rs309920	1.00[ASN][1000 genomes]
rs309928	1.00[ASN][1000 genomes]
rs309933	1.00[ASN][1000 genomes]
rs309937	1.00[ASN][1000 genomes]
rs309943	1.00[ASN][1000 genomes]
rs309944	1.00[ASN][1000 genomes]
rs309945	1.00[ASN][1000 genomes]
rs315247	1.00[ASN][1000 genomes]
rs315248	1.00[ASN][1000 genomes]
rs315259	1.00[ASN][1000 genomes]
rs315261	1.00[ASN][1000 genomes]
rs315265	1.00[ASN][1000 genomes]
rs315267	1.00[ASN][1000 genomes]
rs35137321	0.84[AFR][1000 genomes]
rs375476	1.00[ASN][1000 genomes]
rs378886	1.00[ASN][1000 genomes]
rs387180	1.00[ASN][1000 genomes]
rs388377	1.00[ASN][1000 genomes]
rs399923	1.00[ASN][1000 genomes]
rs401102	1.00[ASN][1000 genomes]
rs401583	1.00[ASN][1000 genomes]
rs404899	1.00[ASN][1000 genomes]
rs408180	1.00[ASN][1000 genomes]
rs410225	1.00[ASN][1000 genomes]
rs424862	1.00[ASN][1000 genomes]
rs426335	1.00[ASN][1000 genomes]
rs435255	1.00[ASN][1000 genomes]
rs435445	1.00[ASN][1000 genomes]
rs55962848	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55981030	1.00[ASN][1000 genomes]
rs56027646	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56035132	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56092116	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56289342	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56307687	1.00[ASN][1000 genomes]
rs56346893	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57643758	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57792463	1.00[ASN][1000 genomes]
rs58933160	1.00[ASN][1000 genomes]
rs60087060	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60244620	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60303876	1.00[ASN][1000 genomes]
rs6887414	1.00[ASN][1000 genomes]
rs72746737	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746739	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746746	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746753	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746762	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746766	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746768	1.00[ASN][1000 genomes]
rs72746770	1.00[ASN][1000 genomes]
rs72748850	1.00[ASN][1000 genomes]
rs72757078	1.00[ASN][1000 genomes]
rs72757080	1.00[ASN][1000 genomes]
rs72759052	1.00[ASN][1000 genomes]
rs72759060	1.00[ASN][1000 genomes]
rs72759062	1.00[ASN][1000 genomes]
rs72759067	1.00[ASN][1000 genomes]
rs72759071	1.00[ASN][1000 genomes]
rs72759072	1.00[ASN][1000 genomes]
rs72759073	1.00[ASN][1000 genomes]
rs72759075	1.00[ASN][1000 genomes]
rs72759077	1.00[ASN][1000 genomes]
rs72759084	1.00[ASN][1000 genomes]
rs72759085	1.00[ASN][1000 genomes]
rs72759086	1.00[ASN][1000 genomes]
rs72759087	1.00[ASN][1000 genomes]
rs72759093	1.00[ASN][1000 genomes]
rs72759095	1.00[ASN][1000 genomes]
rs72759097	1.00[ASN][1000 genomes]
rs72762696	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72762697	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72762698	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72762701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764507	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764515	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764517	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72764524	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73754528	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702086	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
2	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
3	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
4	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
5	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
6	nsv534185	chr5:42804840-43067088	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	165 gene(s)	inside rSNPs	diseases
7	nsv1018276	chr5:42809131-42975245	Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	esv1813779	chr5:42906572-42992040	Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv1029288	chr5:42928085-43047323	Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	120 gene(s)	inside rSNPs	diseases
10	nsv1020910	chr5:42929799-43000021	Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv537738	chr5:42929799-43000021	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
12	nsv968169	chr5:42956713-43043472	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	116 gene(s)	inside rSNPs	diseases
13	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
14	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
15	nsv881436	chr5:42967215-43008917	Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
16	nsv880447	chr5:42967215-43030798	Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42954800-42982200	Weak transcription	HUVEC	blood vessel
2	chr5:42955000-42972600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr5:42962200-42984400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:42966400-42974600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:42966600-42972000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr5:42966600-42972400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:42966800-42972200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:42967000-42985600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr5:42967400-42972200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:42969400-42985400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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