Variant report

Variant	rs55738215
Chromosome Location	chr5:75304811-75304812
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56034047	1.00[AMR][1000 genomes]
rs56205297	1.00[AMR][1000 genomes]
rs58324193	1.00[AMR][1000 genomes]
rs59029235	1.00[AMR][1000 genomes]
rs59727044	1.00[AMR][1000 genomes]
rs60584176	1.00[AMR][1000 genomes]
rs60869443	1.00[AMR][1000 genomes]
rs61126124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6453200	1.00[AMR][1000 genomes]
rs6863226	1.00[AMR][1000 genomes]
rs6877392	1.00[AMR][1000 genomes]
rs73113719	1.00[AMR][1000 genomes]
rs73126282	1.00[AMR][1000 genomes]
rs73126297	1.00[AMR][1000 genomes]
rs73128210	1.00[AMR][1000 genomes]
rs73130210	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73130214	1.00[AMR][1000 genomes]
rs73130239	1.00[AMR][1000 genomes]
rs73130289	1.00[AMR][1000 genomes]
rs73132248	1.00[AMR][1000 genomes]
rs7724449	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75302400-75306200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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