Variant report

Variant	rs59727044
Chromosome Location	chr5:75400509-75400510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55738215	1.00[AMR][1000 genomes]
rs56034047	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56205297	1.00[AMR][1000 genomes]
rs58324193	1.00[AMR][1000 genomes]
rs59029235	1.00[AMR][1000 genomes]
rs60584176	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60869443	1.00[AMR][1000 genomes]
rs61126124	1.00[AMR][1000 genomes]
rs6453200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863226	1.00[AMR][1000 genomes]
rs6877392	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73113719	1.00[AMR][1000 genomes]
rs73126282	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73126297	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73128210	1.00[AMR][1000 genomes]
rs73130210	1.00[AMR][1000 genomes]
rs73130214	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73130239	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73130289	1.00[AMR][1000 genomes]
rs73132248	1.00[AMR][1000 genomes]
rs7724449	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv869885	chr5:75365786-75419656	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1033350	chr5:75367809-75538460	Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1034853	chr5:75382047-75534981	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv462212	chr5:75388834-75534570	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv598676	chr5:75388834-75534570	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv2755729	chr5:75400467-75429015	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75400000-75401800	Enhancers	Stomach Mucosa	stomach
2	chr5:75400200-75401200	Enhancers	Duodenum Mucosa	Duodenum

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