Variant report
| Variant | rs58324193 |
|---|---|
| Chromosome Location | chr5:75486574-75486575 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:75484578..75486755-chr5:75492728..75495660,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs55738215 | 1.00[AMR][1000 genomes] |
| rs56034047 | 1.00[AMR][1000 genomes] |
| rs56205297 | 1.00[AMR][1000 genomes] |
| rs59029235 | 1.00[AMR][1000 genomes] |
| rs59727044 | 1.00[AMR][1000 genomes] |
| rs60584176 | 1.00[AMR][1000 genomes] |
| rs60869443 | 1.00[AMR][1000 genomes] |
| rs61126124 | 1.00[AMR][1000 genomes] |
| rs6453200 | 1.00[AMR][1000 genomes] |
| rs6863226 | 1.00[AMR][1000 genomes] |
| rs6877392 | 1.00[AMR][1000 genomes] |
| rs73113719 | 1.00[AMR][1000 genomes] |
| rs73126282 | 1.00[AMR][1000 genomes] |
| rs73126297 | 1.00[AMR][1000 genomes] |
| rs73128210 | 1.00[AMR][1000 genomes] |
| rs73130210 | 1.00[AMR][1000 genomes] |
| rs73130214 | 1.00[AMR][1000 genomes] |
| rs73130239 | 1.00[AMR][1000 genomes] |
| rs73130289 | 1.00[AMR][1000 genomes] |
| rs73132248 | 1.00[AMR][1000 genomes] |
| rs7724449 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1027368 | chr5:74759999-75663712 | Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033350 | chr5:75367809-75538460 | Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034853 | chr5:75382047-75534981 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv462212 | chr5:75388834-75534570 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv598676 | chr5:75388834-75534570 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 6 | nsv526084 | chr5:75410511-75530494 | Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:75486200-75490200 | Enhancers | Placenta | Placenta |
