The 2.0 version of rSNPBase

Variant report

Variant rs55738808
Chromosome Location chr7:22164014-22164015
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:22149800-22177600 Weak transcription H1 Cell Line embryonic stem cell
2 chr7:22150000-22177800 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr7:22150200-22173200 Weak transcription HUES64 Cell Line embryonic stem cell
4 chr7:22150400-22164400 Weak transcription Fetal Kidney kidney
5 chr7:22153000-22193000 Strong transcription Dnd41 blood
6 chr7:22154400-22169800 Weak transcription Fetal Muscle Trunk muscle
7 chr7:22155600-22178200 Weak transcription H9 Cell Line embryonic stem cell
8 chr7:22156000-22167600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr7:22156000-22181000 Weak transcription Gastric stomach
10 chr7:22156000-22186600 Weak transcription Brain Germinal Matrix brain
11 chr7:22156800-22186400 Strong transcription Liver Liver
12 chr7:22157200-22164600 Weak transcription Primary B cells from cord blood blood
13 chr7:22157800-22174600 Weak transcription Colonic Mucosa Colon
14 chr7:22158800-22166000 Strong transcription Rectal Mucosa Donor 31 rectum
15 chr7:22159000-22167400 Weak transcription HMEC breast
16 chr7:22159800-22172400 Weak transcription Fetal Stomach stomach
17 chr7:22159800-22175800 Weak transcription HSMMtube muscle
18 chr7:22159800-22214000 Weak transcription Small Intestine intestine
19 chr7:22160000-22173600 Strong transcription HepG2 liver
20 chr7:22160400-22183000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr7:22161200-22168600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr7:22161200-22169000 Enhancers HUVEC blood vessel
23 chr7:22161400-22166200 Strong transcription Breast Myoepithelial Primary Cells Breast
24 chr7:22161600-22169600 Weak transcription Aorta Aorta
25 chr7:22162000-22165200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr7:22162000-22174800 Weak transcription iPS-20b Cell Line embryonic stem cell
27 chr7:22162200-22166200 Strong transcription Brain Anterior Caudate brain
28 chr7:22162200-22167600 Weak transcription Osteobl bone
29 chr7:22162200-22181400 Weak transcription Primary T cells from cord blood blood
30 chr7:22162200-22186600 Weak transcription GM12878-XiMat blood
31 chr7:22162200-22198000 Weak transcription Rectal Smooth Muscle rectum
32 chr7:22162400-22166000 Strong transcription Brain Hippocampus Middle brain
33 chr7:22162400-22177800 Weak transcription Fetal Muscle Leg muscle
34 chr7:22162600-22164800 Weak transcription Thymus Thymus
35 chr7:22163000-22164600 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr7:22163000-22164800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr7:22163000-22164800 Weak transcription Adipose Nuclei Adipose
38 chr7:22163000-22164800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr7:22163000-22164800 Weak transcription Placenta Placenta
40 chr7:22163000-22164800 Weak transcription Left Ventricle heart
41 chr7:22163000-22164800 Weak transcription Rectal Mucosa Donor 29 rectum
42 chr7:22163000-22169400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr7:22163000-22179000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
44 chr7:22163000-22187800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr7:22163000-22190600 Strong transcription Fetal Thymus thymus
46 chr7:22163200-22164400 Weak transcription Brain Substantia Nigra brain
47 chr7:22163200-22164800 Weak transcription Esophagus oesophagus
48 chr7:22163200-22164800 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr7:22163200-22164800 Weak transcription Fetal Intestine Small intestine
50 chr7:22163200-22164800 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015