The 2.0 version of rSNPBase

Variant report

Variant rs6949906
Chromosome Location chr7:22261180-22261181
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:22238000-22264600 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr7:22241000-22267800 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr7:22243400-22307200 Weak transcription Thymus Thymus
4 chr7:22250800-22261800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr7:22252400-22264000 Weak transcription Spleen Spleen
6 chr7:22254000-22274000 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr7:22254600-22274000 Weak transcription H1 Cell Line embryonic stem cell
8 chr7:22256200-22264000 Weak transcription Pancreas Pancrea
9 chr7:22256200-22264600 Strong transcription Dnd41 blood
10 chr7:22258800-22262000 Weak transcription Primary B cells from cord blood blood
11 chr7:22259000-22261800 Weak transcription Duodenum Mucosa Duodenum
12 chr7:22259000-22270600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr7:22259000-22276400 Weak transcription Esophagus oesophagus
14 chr7:22259200-22261200 Weak transcription Fetal Thymus thymus
15 chr7:22259200-22262000 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr7:22259600-22262000 Weak transcription Fetal Intestine Large intestine
17 chr7:22259800-22262000 Weak transcription Liver Liver
18 chr7:22259800-22262800 Weak transcription Brain Substantia Nigra brain
19 chr7:22259800-22281600 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr7:22260000-22264000 Weak transcription Placenta Placenta
21 chr7:22260000-22264000 Weak transcription Lung lung
22 chr7:22260000-22264200 Weak transcription Left Ventricle heart
23 chr7:22260000-22265000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr7:22260000-22268600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr7:22260000-22269400 Weak transcription Brain Anterior Caudate brain
26 chr7:22260000-22269400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr7:22260200-22263200 Weak transcription Brain Hippocampus Middle brain
28 chr7:22260400-22261200 Enhancers Fetal Adrenal Gland Adrenal Gland
29 chr7:22260600-22261200 Enhancers GM12878-XiMat blood
30 chr7:22260600-22261800 Weak transcription HepG2 liver
31 chr7:22260600-22263200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr7:22260600-22264000 Weak transcription Aorta Aorta
33 chr7:22260600-22266200 Weak transcription Brain Inferior Temporal Lobe brain
34 chr7:22260800-22261200 Weak transcription Brain Angular Gyrus brain
35 chr7:22260800-22263400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr7:22260800-22267200 Weak transcription Brain Cingulate Gyrus brain
37 chr7:22260800-22268600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr7:22260800-22278400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr7:22260800-22281400 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015