Variant report

Variant	rs7792589
Chromosome Location	chr7:22183756-22183757
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22182780..22184879-chr7:22188004..22190360,2	MCF-7	breast:

rs_ID	r²[population]
rs1419758	1.00[AMR][1000 genomes]
rs55738808	1.00[AMR][1000 genomes]
rs60771684	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949403	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949604	1.00[AMR][1000 genomes]
rs6949906	1.00[AMR][1000 genomes]
rs73683307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683308	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685000	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22153000-22193000	Strong transcription	Dnd41	blood
2	chr7:22156000-22186600	Weak transcription	Brain Germinal Matrix	brain
3	chr7:22156800-22186400	Strong transcription	Liver	Liver
4	chr7:22159800-22214000	Weak transcription	Small Intestine	intestine
5	chr7:22162200-22186600	Weak transcription	GM12878-XiMat	blood
6	chr7:22162200-22198000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:22163000-22187800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:22163000-22190600	Strong transcription	Fetal Thymus	thymus
9	chr7:22163200-22186800	Weak transcription	Right Atrium	heart
10	chr7:22168000-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:22168000-22195800	Weak transcription	NHEK	skin
12	chr7:22169400-22186600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:22174400-22186400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:22174400-22190400	Strong transcription	HepG2	liver
15	chr7:22175200-22193600	Weak transcription	HUVEC	blood vessel
16	chr7:22176200-22185600	Genic enhancers	Brain Hippocampus Middle	brain
17	chr7:22176200-22198200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:22176400-22185600	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr7:22176400-22186800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:22176400-22203200	Weak transcription	Stomach Mucosa	stomach
21	chr7:22176600-22184600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr7:22176800-22184800	Genic enhancers	Brain Inferior Temporal Lobe	brain
23	chr7:22177400-22186600	Weak transcription	Ovary	ovary
24	chr7:22177800-22185400	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr7:22177800-22195800	Weak transcription	HMEC	breast
26	chr7:22179000-22186800	Weak transcription	Fetal Brain Female	brain
27	chr7:22179200-22184000	Weak transcription	Colonic Mucosa	Colon
28	chr7:22179400-22191400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr7:22179600-22186400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr7:22179600-22206600	Weak transcription	Fetal Stomach	stomach
31	chr7:22180200-22184800	Genic enhancers	Brain Substantia Nigra	brain
32	chr7:22180800-22185800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:22181000-22184600	Genic enhancers	Brain Angular Gyrus	brain
34	chr7:22181000-22185000	Strong transcription	Left Ventricle	heart
35	chr7:22181000-22185400	Genic enhancers	Brain Cingulate Gyrus	brain
36	chr7:22181000-22186600	Weak transcription	Fetal Kidney	kidney
37	chr7:22181200-22183800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr7:22181400-22184000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:22181400-22184000	Weak transcription	Fetal Intestine Small	intestine
40	chr7:22181400-22186800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr7:22181400-22192800	Weak transcription	Right Ventricle	heart
42	chr7:22181400-22193600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr7:22181400-22199000	Weak transcription	Gastric	stomach
44	chr7:22181800-22183800	Weak transcription	Esophagus	oesophagus
45	chr7:22181800-22184200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr7:22181800-22193200	Weak transcription	Placenta	Placenta
47	chr7:22182000-22184200	Weak transcription	Adipose Nuclei	Adipose
48	chr7:22182000-22184200	Enhancers	Brain Anterior Caudate	brain
49	chr7:22182400-22184200	Weak transcription	Fetal Brain Male	brain
50	chr7:22182400-22184400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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