Variant report

Variant	rs55742512
Chromosome Location	chr22:33008120-33008121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16990867	0.88[EUR][1000 genomes]
rs28373783	0.88[EUR][1000 genomes]
rs55904255	0.88[EUR][1000 genomes]
rs56315097	0.88[EUR][1000 genomes]
rs58659637	0.88[EUR][1000 genomes]
rs7284915	0.88[EUR][1000 genomes]
rs7290002	0.88[EUR][1000 genomes]
rs7290248	0.88[EUR][1000 genomes]
rs7291390	0.88[EUR][1000 genomes]
rs73881763	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73881769	0.88[EUR][1000 genomes]
rs73881771	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9619279	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33002600-33009800	Weak transcription	Fetal Kidney	kidney
2	chr22:33004000-33008800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr22:33004000-33009400	Weak transcription	Spleen	Spleen
4	chr22:33004000-33011600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr22:33004000-33011600	Weak transcription	Placenta	Placenta
6	chr22:33004000-33011800	Weak transcription	Left Ventricle	heart
7	chr22:33004000-33012600	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links