Variant report

Variant	rs9619279
Chromosome Location	chr22:33019971-33019972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:33014781..33017660-chr22:33019637..33021375,2	MCF-7	breast:
2	chr22:33016718..33020351-chr22:33021844..33025503,4	K562	blood:
3	chr22:33015941..33022634-chr22:33022783..33027992,6	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12166424	0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13340088	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13340089	0.85[YRI][hapmap];0.82[AMR][1000 genomes]
rs16990867	1.00[CEU][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28373783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55742512	0.88[EUR][1000 genomes]
rs55771461	0.82[AMR][1000 genomes]
rs55904255	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56315097	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58007110	0.82[AMR][1000 genomes]
rs58659637	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7284915	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7290002	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7290248	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7291390	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7291935	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73881763	0.94[EUR][1000 genomes]
rs73881769	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73881771	1.00[EUR][1000 genomes]
rs8140105	0.85[YRI][hapmap]
rs9619282	0.85[YRI][hapmap];0.82[AMR][1000 genomes]
rs9621511	0.84[YRI][hapmap];0.82[AMR][1000 genomes]
rs9621512	0.82[YRI][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1061824	chr22:33013014-33101138	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33014200-33022200	Weak transcription	Small Intestine	intestine
2	chr22:33016000-33020000	Weak transcription	Liver	Liver
3	chr22:33017000-33020200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr22:33017000-33020600	Enhancers	Fetal Kidney	kidney
5	chr22:33017000-33021000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr22:33017000-33021000	Enhancers	Fetal Muscle Leg	muscle
7	chr22:33017000-33021000	Enhancers	Fetal Stomach	stomach
8	chr22:33017000-33022600	Enhancers	Fetal Lung	lung
9	chr22:33017000-33022600	Enhancers	Right Atrium	heart
10	chr22:33017000-33025800	Enhancers	Left Ventricle	heart
11	chr22:33017000-33025800	Enhancers	Spleen	Spleen
12	chr22:33017000-33027200	Enhancers	Placenta	Placenta
13	chr22:33017200-33020600	Enhancers	Colon Smooth Muscle	Colon
14	chr22:33017200-33020800	Enhancers	Ovary	ovary
15	chr22:33017400-33020000	Enhancers	Fetal Heart	heart
16	chr22:33017400-33020600	Enhancers	Colonic Mucosa	Colon
17	chr22:33017400-33020600	Enhancers	Right Ventricle	heart
18	chr22:33017400-33020600	Enhancers	NHLF	lung
19	chr22:33017400-33021000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr22:33017600-33020000	Enhancers	Rectal Smooth Muscle	rectum
21	chr22:33017600-33020200	Enhancers	Fetal Intestine Small	intestine
22	chr22:33017600-33020400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr22:33017600-33020400	Enhancers	Brain Hippocampus Middle	brain
24	chr22:33017800-33020200	Enhancers	Brain Substantia Nigra	brain
25	chr22:33017800-33020400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr22:33017800-33020400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr22:33017800-33020400	Enhancers	HSMM	muscle
28	chr22:33017800-33020600	Enhancers	Osteobl	bone
29	chr22:33017800-33020800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr22:33017800-33022200	Weak transcription	Psoas Muscle	Psoas
31	chr22:33017800-33022200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr22:33018200-33020600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr22:33018400-33021000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr22:33018400-33025800	Enhancers	Adipose Nuclei	Adipose
35	chr22:33018600-33020000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr22:33018600-33020000	Enhancers	HSMMtube	muscle
37	chr22:33018600-33020400	Enhancers	NH-A	brain
38	chr22:33018600-33020400	Enhancers	NHDF-Ad	bronchial
39	chr22:33018600-33020800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr22:33018600-33020800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr22:33018600-33021400	Enhancers	Fetal Muscle Trunk	muscle
42	chr22:33018600-33021400	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr22:33018600-33023800	Enhancers	Hela-S3	cervix
44	chr22:33019000-33020600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr22:33019000-33022200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr22:33019000-33022600	Weak transcription	Fetal Thymus	thymus
47	chr22:33019000-33023400	Weak transcription	Brain Anterior Caudate	brain
48	chr22:33019000-33023600	Enhancers	Lung	lung
49	chr22:33019200-33020000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr22:33019200-33020000	Enhancers	Rectal Mucosa Donor 31	rectum

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