Variant report

Variant	rs55743629
Chromosome Location	chr1:165269274-165269275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10494442	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12135437	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12404307	0.93[ASN][1000 genomes]
rs12405561	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17404691	0.84[ASN][1000 genomes]
rs1811714	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4361970	0.84[ASN][1000 genomes]
rs56820548	0.90[ASN][1000 genomes]
rs59974691	0.84[ASN][1000 genomes]
rs6677100	0.94[ASN][1000 genomes]
rs7528111	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165267600-165276000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:165268200-165283400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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