Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165253102..165255836-chr1:165256006..165257807,2	MCF-7	breast:
2	chr1:165243074..165245527-chr1:165251469..165253702,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494442	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10918144	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10918145	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs12135437	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs12404307	0.85[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs12411054	0.82[ASN][1000 genomes]
rs1343554	0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16841924	0.85[CEU][hapmap];0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17404691	0.86[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs1811714	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs34458079	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4361970	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55743629	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56274812	0.82[ASN][1000 genomes]
rs56820548	0.83[ASN][1000 genomes]
rs59974691	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6677100	0.87[ASN][1000 genomes]
rs7518895	0.84[ASN][1000 genomes]
rs7519089	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs7528111	0.85[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165248800-165256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165251600-165256600	Weak transcription	HepG2	liver
3	chr1:165252600-165254200	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr1:165253200-165254400	Enhancers	Liver	Liver
5	chr1:165253400-165253800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:165253400-165254600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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