Variant report

Variant	rs10918145
Chromosome Location	chr1:165237960-165237961
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10494442	1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[ASN][1000 genomes]
rs10918144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135437	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs12404307	1.00[CHB][hapmap];0.87[CHD][hapmap];0.84[MEX][hapmap]
rs12405561	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs12411054	1.00[ASN][1000 genomes]
rs1343554	1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs16841924	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.97[ASN][1000 genomes]
rs17404691	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1811714	0.85[CHB][hapmap]
rs34458079	1.00[ASN][1000 genomes]
rs4361970	1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[ASN][1000 genomes]
rs56274812	1.00[ASN][1000 genomes]
rs56820548	0.81[ASN][1000 genomes]
rs59974691	0.82[ASN][1000 genomes]
rs7518895	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7519089	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7528111	1.00[CHB][hapmap];0.91[CHD][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10918145	KCNJ10	cis	parietal	SCAN
rs10918145	TAGLN2	cis	cerebellum	SCAN
rs10918145	TMCO1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165229200-165241600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165235000-165245000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:165235200-165244600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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