Variant report

Variant	rs12411054
Chromosome Location	chr1:165232806-165232807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10494440	0.89[EUR][1000 genomes]
rs10494442	0.85[ASN][1000 genomes]
rs10918144	1.00[ASN][1000 genomes]
rs10918145	1.00[ASN][1000 genomes]
rs12405561	0.82[ASN][1000 genomes]
rs1343554	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16841924	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17404691	0.84[ASN][1000 genomes]
rs34458079	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4361970	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56274812	1.00[ASN][1000 genomes]
rs56820548	0.81[ASN][1000 genomes]
rs59974691	0.82[ASN][1000 genomes]
rs72702429	0.89[EUR][1000 genomes]
rs7518895	0.97[ASN][1000 genomes]
rs7519089	0.97[ASN][1000 genomes]
rs7528111	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165229000-165233800	Weak transcription	Psoas Muscle	Psoas
2	chr1:165229200-165241600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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