Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494442	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs10918144	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs10918145	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs12135437	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs12404307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12405561	0.86[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs12411054	0.84[ASN][1000 genomes]
rs1343554	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs16841924	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs1811714	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs34458079	0.84[ASN][1000 genomes]
rs4361970	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs55743629	0.84[ASN][1000 genomes]
rs56274812	0.84[ASN][1000 genomes]
rs56820548	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59974691	0.91[ASN][1000 genomes]
rs6677100	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7518895	0.87[ASN][1000 genomes]
rs7519089	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs7528111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165244400-165252000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:165248600-165250400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:165248800-165250400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:165248800-165256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:165249000-165250400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:165249000-165250600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:165249000-165250800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:165249000-165250800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:165249200-165250200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:165249400-165250400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr1:165249400-165250600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr1:165249600-165250000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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