Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494440	0.92[CEU][hapmap]
rs10494442	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10918144	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10918145	1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs12135437	0.85[CEU][hapmap];0.85[CHB][hapmap]
rs12404307	1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs12405561	0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12411054	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16841924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17404691	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs1811714	0.86[CHB][hapmap]
rs34458079	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4361970	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs56274812	0.94[ASN][1000 genomes]
rs56820548	0.86[ASN][1000 genomes]
rs59974691	0.87[ASN][1000 genomes]
rs6677100	0.85[ASN][1000 genomes]
rs7518895	0.97[ASN][1000 genomes]
rs7519089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7528111	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165244400-165252000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:165245400-165249000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:165245400-165249000	Weak transcription	Fetal Brain Male	brain
4	chr1:165245600-165249000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:165245800-165248400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:165245800-165248600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:165246000-165249000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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