Variant report

Variant	rs55760681
Chromosome Location	chr4:144127399-144127400
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144126856..144127443-chr4:144403648..144404551,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55722985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55725000	1.00[AMR][1000 genomes]
rs55747899	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55915992	1.00[AMR][1000 genomes]
rs56226922	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57368559	0.93[AFR][1000 genomes]
rs57440597	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58063714	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58798255	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59311168	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59434608	1.00[AMR][1000 genomes]
rs59442113	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60222887	1.00[AMR][1000 genomes]
rs60607336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61165291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61242181	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61286725	1.00[AMR][1000 genomes]
rs6825768	1.00[AMR][1000 genomes]
rs6855499	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850675	1.00[AMR][1000 genomes]
rs73850676	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850677	1.00[AMR][1000 genomes]
rs73850678	1.00[AMR][1000 genomes]
rs73850679	1.00[AMR][1000 genomes]
rs73850680	1.00[AMR][1000 genomes]
rs73850681	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850682	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850684	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850685	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850686	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850687	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850694	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850695	0.84[AFR][1000 genomes]
rs7667499	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144107400-144137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:144108200-144128200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:144108600-144129200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:144109200-144142800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:144109800-144138200	Strong transcription	Fetal Thymus	thymus
6	chr4:144110000-144128200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:144110000-144128400	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:144110200-144136600	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr4:144110200-144138000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:144110200-144145600	Weak transcription	Stomach Mucosa	stomach
11	chr4:144110800-144127600	Strong transcription	HSMM	muscle
12	chr4:144110800-144133000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr4:144110800-144137400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:144111200-144128400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:144111400-144128400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:144111400-144128600	Strong transcription	Primary B cells from peripheral blood	blood
17	chr4:144111400-144131400	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr4:144111400-144137400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr4:144111600-144128400	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr4:144111800-144136200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:144112400-144128200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr4:144113000-144137400	Strong transcription	Dnd41	blood
23	chr4:144114600-144137400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr4:144114800-144136200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr4:144116000-144128200	Strong transcription	Placenta	Placenta
26	chr4:144116000-144129000	Strong transcription	Primary hematopoietic stem cells	blood
27	chr4:144116200-144129600	Strong transcription	Primary B cells from cord blood	blood
28	chr4:144116600-144127800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr4:144118400-144134800	Weak transcription	Gastric	stomach
30	chr4:144118400-144142600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:144118400-144142800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr4:144118400-144143000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:144118400-144150000	Weak transcription	Aorta	Aorta
34	chr4:144118600-144129000	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr4:144118800-144135600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr4:144118800-144136400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr4:144119200-144136200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr4:144119400-144144400	Weak transcription	Hela-S3	cervix
39	chr4:144120400-144133400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr4:144120600-144134800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr4:144120600-144142800	Weak transcription	Spleen	Spleen
42	chr4:144120600-144147000	Weak transcription	Esophagus	oesophagus
43	chr4:144120800-144127400	Weak transcription	Lung	lung
44	chr4:144120800-144133400	Weak transcription	Brain Substantia Nigra	brain
45	chr4:144120800-144149400	Weak transcription	Pancreas	Pancrea
46	chr4:144121000-144139800	Weak transcription	Brain Angular Gyrus	brain
47	chr4:144122000-144132600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr4:144122000-144134800	Weak transcription	Psoas Muscle	Psoas
49	chr4:144122200-144134800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr4:144122400-144133400	Weak transcription	Small Intestine	intestine

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