Variant report

Variant	rs55768634
Chromosome Location	chr13:97980917-97980918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs74103237	1.00[AFR][1000 genomes]
rs74104398	1.00[AFR][1000 genomes]
rs74106909	1.00[AFR][1000 genomes]
rs74106916	1.00[AFR][1000 genomes]
rs74106920	1.00[AFR][1000 genomes]
rs74106933	1.00[AFR][1000 genomes]
rs74106936	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3333582	chr13:97980451-97983549	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
3	chr13:97954400-97986200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr13:97955000-97987000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr13:97955200-97986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr13:97959400-97988800	Weak transcription	Fetal Intestine Large	intestine
7	chr13:97961400-97987200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:97962000-97991200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr13:97963000-97984400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:97965200-97985800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr13:97965600-97988800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr13:97965800-97987200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr13:97967400-97991400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr13:97969400-97981600	Weak transcription	Spleen	Spleen
15	chr13:97969400-97981800	Weak transcription	Esophagus	oesophagus
16	chr13:97969600-97982000	Weak transcription	Primary B cells from cord blood	blood
17	chr13:97969600-97987200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr13:97969800-97986600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr13:97971400-97981800	Weak transcription	Gastric	stomach
20	chr13:97971600-97981600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:97971600-97991400	Weak transcription	Stomach Mucosa	stomach
22	chr13:97971800-97981600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:97971800-97986400	Weak transcription	Primary T cells from cord blood	blood
24	chr13:97971800-97986400	Weak transcription	Aorta	Aorta
25	chr13:97971800-97986400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr13:97971800-97987200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr13:97971800-97987600	Weak transcription	Fetal Intestine Small	intestine
28	chr13:97971800-97987800	Weak transcription	Colonic Mucosa	Colon
29	chr13:97971800-97991800	Weak transcription	Small Intestine	intestine
30	chr13:97972000-97987200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr13:97972400-97981800	Weak transcription	Liver	Liver
32	chr13:97972400-97986400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr13:97973000-97983200	Enhancers	Brain Cingulate Gyrus	brain
34	chr13:97973200-97983400	Enhancers	Rectal Smooth Muscle	rectum
35	chr13:97976200-97990400	Weak transcription	Fetal Brain Male	brain
36	chr13:97977000-97981800	Weak transcription	HepG2	liver
37	chr13:97977400-97987000	Weak transcription	Hela-S3	cervix
38	chr13:97978200-97983000	Enhancers	Psoas Muscle	Psoas
39	chr13:97978200-97987000	Enhancers	Colon Smooth Muscle	Colon
40	chr13:97978800-97982000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr13:97979000-97982400	Enhancers	NHLF	lung
42	chr13:97979200-97981000	Enhancers	Osteobl	bone
43	chr13:97979200-97981200	Enhancers	A549	lung
44	chr13:97979200-97981800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr13:97979200-97981800	Enhancers	HUVEC	blood vessel
46	chr13:97979200-97982000	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr13:97979400-97981000	Enhancers	HMEC	breast
48	chr13:97979400-97981200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr13:97979400-97981400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr13:97979400-97981800	Enhancers	NHDF-Ad	bronchial

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